Yes. The Troubadour can be strung with either, so changing them shouldn’t be a problem. Besides, nylon produces less tension than gut so generally speaking it is pretty much always safe to go from gut to nylon, although not always safe to go from nylon to gut.
Also the Troubadour is made for concert gauge strings, not folk gauge strings, so I would avoid restringing it with folk gauge.
I believe the Troubadour comes with gut in the Fifth octave and nylon in the 4th, 3rd, 2nd and 1st octaves, and that is how they recommend stringing it. However you can restring the entire 5th octave with Pedal nylon if you wish.
I keep the fifth on my L&H Folk harp strung with Pedal Gut and the rest in nylon and I really like the way that sounds. On my Pedal